Software Resources
Statement of Purpose
This page is a finding aid for users to discover information about software resources relevant to the SPNHC community. This includes but is not limited to collections/content management systems, specimen digitization tools, and tools designed to facilitate specimen-based research. Many of the resources below have been presented in SPNHC DemoCamp, a venue at the Society's annual meeting for software developers, biodiversity informaticians, digitization professionals, and collection managers to convene and share innovative approaches for the use of technology to enhance the management and use of natural history collections. See also the wiki page on Digitization for related information.
This page is not a primary repository of information about any of the resources included in the list below. This means that no files (media or otherwise) should be uploaded to this wiki in support of the text. If in doubt, link out!
Software Resources
The list of resources here includes both open source and proprietary software operating on both free and paid sustainability models. SPNHC does not endorse any of the resources included in the list below, and anyone is welcome to add resources that fall within the scope define in the Statement of Purpose.
| Name of resource | Developer | Category | Primary link | Primary point(s) of contact | Summary | Additional links | Links to DemoCamp presentations |
|---|---|---|---|---|---|---|---|
| Symbiota | Arizona State University | collections management system | Symbiota is an open-source software for managing and mobilizing biodiversity data that supports a distributed network of 40+ theme-based research portals incorporating data from over 1,400 biodiversity collections. The Symbiota Support Hub (SSH) provides comprehensive services for active and developing biodiversity data portals powered by the Symbiota software platform. | ||||
| TaxonWorks | SpeciesFile Group | collections management system | TaxonWorks (TW) is a web-based platform, a workbench, serving taxonomists, biodiversity scientists, natural history collections and more. It allows you to capture, organize, and enrich your taxonomic, nomenclature, collections, and bibliographic source data; share it with collaborators; and package it for analysis and publication. The software has been in production for over 5 years and is very actively updated by a core team of 5 with numerous other community and internal contributions. Anyone in the world can and is encouraged to contribute to the open-source code base, https://github.com/SpeciesFileGroup/taxonworks. Talk with us and the TW community on gitter (https://gitter.im/SpeciesFileGroup/taxonworks). | ||||
| Arctos | Arctos Consortium | collections management system | Arctos is a community of museums and organizations that collaborate in the development of an online collection management information system that we consider to be fundamental research infrastructure intended for curators, collection managers, investigators, educators, and anyone interested in natural and cultural history. | ||||
| DiSSCo Knowledgebase | DiSSCo | knowledge base | |||||
| Global Names Architecture | SpeciesFile Group | data cleaning tool | https://globalnames.org/ | The Global Names Architecture (GNA) is a system of web-services which helps people to register, find, index, check and organize biological scientific names and interconnect on-line information about species. | |||
| GEOLocate | Yale Peabody Museum of Natural History | geospatial tool | https://www.geo-locate.org/default.html | The GEOLocate project is an effort to develop software and services for translating textual locality descriptions associated with biodiversity collections data into geographic coordinates. | |||
| TORCH Digitization Hub | Botanical Research Institute of Texas | knowledge base | https://github.com/TORCH-TCN/torch_hub | Jason Best (jbest@brit.org), Diego Barroso (dbarroso@brit.org) | The Hub provides a web-based interface for managing workflows, monitoring progress and performance, and generating reports. It can be hosted in the cloud to support distributed digitization projects or hosted locally to support workflows within a single institution. While the Hub was designed for the herbarium digitization workflows of the Texas Oklahoma Regional Consortium of Herbaria (TORCH) Thematic Collections Network, it can be adapted for other types of collections and workflows and, due to its open source nature, can be extended with other image management tools and technologies such as OCR and computer vision. The TORCH Digitization Hub project code and documentation is available at https://github.com/TORCH-TCN/torch_hub. | ||
| Conserv Cloud | collections operations tool | ||||||
| ELViS | collections operations tool | ||||||
| PyrΔTE | |||||||
| Libnova Open Access | |||||||
| EarthCape | collections management system | ||||||
| IrisBG | collections management system | ||||||
| Bionomia | |||||||
| OpenRefine | OpenRefine | data cleaning tool |
Contributors
Anyone is welcome to contribute to this page! If you do, please add yourself to this list of existing contributors: Erica Krimmel, Jason Best, Cat Chapman.
